MRIQC: individual T1w report

Summary

  • BIDS filename: sub-10_ses-01_T1w.
  • Date and time: 2021-02-09, 04:49.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.32546632054437996
cnr3.954165305011027
efc0.5266411699048832
fber7928.646016033723
fwhmavg3.9204633333333327
fwhmx3.89834
fwhmy3.87551
fwhmz3.98754
icvscsf0.1878103029374496
icvsgm0.4340488276352288
icvswm0.3781408694273216
inumed1.2375452518463135
inurange0.31885954737663247
qi10.015391321696631037
qi20.020226975364191824
rpvecsf27.1361400565799
rpvegm12.970365446838395
rpvewm17.480050168295712
sizex176
sizey256
sizez256
snrcsf3.823550771224453
snrgm17.293333357858923
snrtotal16.65493499783975
snrwm28.847920864435874
snrdcsf36.31621741788436
snrdgm79.65891643922899
snrdtotal72.92338645495961
snrdwm102.7950255077655
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1180.1296076544907
summarybgmad6.373230361684285
summarybgmean4.818034900399949
summarybgmedian4.351748660206795
summarybgn2141458.0
summarybgp050.0
summarybgp9513.055245980620384
summarybgstdv5.504774012919293
summarycsfk3.7519047683489752
summarycsfmad65.54198631213592
summarycsfmean377.39200594927576
summarycsfmedian353.28769306093454
summarycsfn23106.0
summarycsfp05276.1370270270854
summarycsfp95570.9945338089019
summarycsfstdv92.39580410515028
summarygmk0.5078610472553216
summarygmmad42.330838698594384
summarygmmean773.2872555499562
summarygmmedian774.9296821504831
summarygmn25234.0
summarygmp05697.2350475341082
summarygmp95843.7085390239954
summarygmstdv44.81000343257457
summarywmk0.855265436124292
summarywmmad30.921969532616345
summarywmmean999.1230737200779
summarywmmedian1000.0000000521541
summarywmn226436.0
summarywmp05939.287799231708
summarywmp951054.0784376710653
summarywmstdv34.66446669136138
tpmoverlapcsf0.16357284784317017
tpmoverlapgm0.4400077760219574
tpmoverlapwm0.5087553262710571
wm2max0.40022656778635834
AcquisitionMatrixPE256
AcquisitionNumber1
AcquisitionTime14:12:15.055000
BaseResolution256
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DeviceSerialNumber167012
DwellTime1.15e-05
EchoTime0.00252
FlipAngle9
ImageOrientationPatientDICOM[-0.0286822, 0.998752, 0.0408958, -0.0737176, 0.0386877, -0.996528]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM']
ImagingFrequency123.253
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressVassar Street 43,Cambridge,Boston,US,02139
InstitutionNameMcGovern Institute for Brain Research (3T1)
InstitutionalDepartmentNameDepartment
InversionTime0.9
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingSteps256
PhaseResolution1
PixelBandwidth170
ProcedureStepDescriptionOliva^Alex Ben
ProtocolNamet1w_mpr_sag_1x1x1_176
PulseSequenceDetails%SiemensSeq%\tfl
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE256
RepetitionTime1.9
SAR0.0584935
ScanOptionsIR
ScanningSequenceGR\IR
SequenceName*tfl3d1_16ns
SequenceVariantSK\SP\MP
SeriesDescriptiont1w_mpr_sag_1x1x1_176
SeriesNumber5
ShimSetting[-5642, -1563, 3131, -181, 13, -153, 20, 13]
SliceThickness1
SoftwareVersionssyngo MR E11
StationNameMRC35115
TxRefAmp221.201
md5sum68206ce3bcc8ade1a29f6e72cddb5868
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.