MRIQC: individual bold report

Summary

  • BIDS filename: sub-09_ses-02_task-train_run-9_bold.
  • Date and time: 2021-02-08, 04:38.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Framewise Displacement was computed using 3dvolreg (AFNI)
    • Framewise Displacement threshold was defined at 0.200000 mm

Visual reports

BOLD average
Standard deviation map
FMRI summary plot

Other

aor0.0007391596638655462
aqi0.002451294579831933
dummy_trs0
dvarsnstd27.59327543240506
dvarsstd1.234215774556963
dvarsvstd1.0109318235864981
efc0.6141156414645842
fber245.89894104003906
fdmean0.09331379119965773
fdnum1
fdperc0.42016806722689076
fwhmavg2.7016224242424243
fwhmx2.498332
fwhmy2.857608
fwhmz2.7489272727272724
gcor0.0171683
gsrx0.006832392420619726
gsry0.09602303057909012
sizet238
sizex76
sizey76
sizez54
snr2.6373112356198747
spacingtr1.75
spacingx2.5
spacingy2.5
spacingz2.75
summarybgk16.25790171781641
summarybgmad184.47807927729912
summarybgmean787.1416015625
summarybgmedian362.21429443359375
summarybgn173705.0
summarybgp05220.02186584472656
summarybgp952894.1337890624995
summarybgstdv1049.6927490234375
summaryfgk0.6279041352685248
summaryfgmad2153.726219476751
summaryfgmean6297.9521484375
summaryfgmedian5922.302734375
summaryfgn73900.0
summaryfgp053386.8232543945314
summaryfgp9510566.695556640625
summaryfgstdv2245.568359375
tsnr71.81244393391535
AcquisitionMatrixPE76
AcquisitionNumber1
AcquisitionTime15:07:54.032500
BandwidthPerPixelPhaseEncode25.8
BaseResolution76
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.000509996
DeviceSerialNumber167012
DwellTime2.9e-06
EchoTime0.03
EchoTrainLength76
EffectiveEchoSpacing0.000509996
FlipAngle71
ImageCommentsUnaliased MB2/PE2/LB
ImageOrientationPatientDICOM[0.999645, 0.0265673, 0.00223055, -0.0258275, 0.98576, -0.166163]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.253
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressVassar Street 43,Cambridge,Boston,US,02139
InstitutionNameMcGovern Institute for Brain Research (3T1)
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
MultibandAccelerationFactor2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps76
PhaseResolution1
PixelBandwidth2270
ProcedureStepDescriptionOliva^Alex Ben
ProtocolNamecmrr_run_fMRI_TRAIN
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE76
RepetitionTime1.75
SAR0.0904544
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_76
SequenceVariantSK\SS
SeriesDescriptioncmrr_run_fMRI_TRAIN
SeriesNumber17
ShimSetting[-5623, -1502, 3165, 460, -46, 123, -162, 3]
SliceThickness2.5
SliceTiming[0, 0.895, 0.0625, 0.96, 0.1275, 1.025, 0.19, 1.0875, 0.255, 1.1525, 0.32, 1.215, 0.3825, 1.28, 0.4475, 1.345, 0.5125, 1.4075, 0.575, 1.4725, 0.64, 1.5375, 0.7025, 1.6, 0.7675, 1.665, 0.8325, 0, 0.895, 0.0625, 0.96, 0.1275, 1.025, 0.19, 1.0875, 0.255, 1.1525, 0.32, 1.215, 0.3825, 1.28, 0.4475, 1.345, 0.5125, 1.4075, 0.575, 1.4725, 0.64, 1.5375, 0.7025, 1.6, 0.7675, 1.665, 0.8325]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.75
StationNameMRC35115
TaskNametrain
TotalReadoutTime0.0382497
TxRefAmp228.823
WipMemBlock4c82ef76-dcfa-47ca-94fa-35ade1a1f408||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja
md5sumd6fbb7563a0c4c6c92eeb02c0aae0210
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.