MRIQC: individual T2w report

Summary

  • BIDS filename: sub-05_ses-01_T2w.
  • Date and time: 2021-02-09, 04:43.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.5597477168238586
cnr2.303941068036654
efc0.44639737843779187
fber2647.653787556689
fwhmavg2.285070967318934
fwhmx2.1734601295483187
fwhmy2.59947
fwhmz2.0822827724084836
icvscsf0.16559929218180192
icvsgm0.38885392135765184
icvswm0.44554678646054624
inumed1.4878231287002563
inurange0.28908641338348384
qi18.261101649678453e-05
qi20.004115804972876504
rpvecsf28.700384909087155
rpvegm12.353410919063773
rpvewm12.734336173846128
sizex256
sizey256
sizez128
snrcsf3.1871404890145145
snrgm7.457770090724171
snrtotal6.159044003598332
snrwm7.8322214310563085
snrdcsf249.78907601981334
snrdgm80.09949644243103
snrdtotal126.94126865867578
snrdwm50.93523351378302
spacingx0.9999999403953552
spacingy1.0
spacingz1.2099989652633667
summarybgk1774.5313446691937
summarybgmad12.86214493443925
summarybgmean21.14356050988611
summarybgmedian17.609736561775208
summarybgn2606268.0
summarybgp054.402434140443802
summarybgp9547.908842116594315
summarybgstdv31.654803929657824
summarycsfk0.18934830964917282
summarycsfmad1273.9282654468486
summarycsfmean4653.677732766943
summarycsfmedian4904.0526657402515
summarycsfn12511.0
summarycsfp051669.2346976920962
summarycsfp957099.184018179774
summarycsfstdv1538.6383779098187
summarygmk0.4922875845753052
summarygmmad195.1398556098134
summarygmmean1586.186891582918
summarygmmedian1572.5753716379404
summarygmn8984.0
summarygmp051257.043852957338
summarygmp951955.3087526388467
summarygmstdv210.85228281132578
summarywmk0.13568348763605487
summarywmmad125.3579200326691
summarywmmean997.8459813450771
summarywmmedian999.9999666661024
summarywmn134627.0
summarywmp05782.9858602136374
summarywmp951201.9940036982298
summarywmstdv127.67721922785458
tpmoverlapcsf0.15244489908218384
tpmoverlapgm0.39915212988853455
tpmoverlapwm0.4729481041431427
wm2max0.16452217630267138
AcquisitionMatrixPE256
AcquisitionNumber1
AcquisitionTime16:18:22.062500
BaseResolution256
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DeviceSerialNumber167012
DwellTime5.4e-06
EchoTime0.12
EchoTrainLength28
FlipAngle90
ImageOrientationPatientDICOM[0.999475, -0.00137518, 0.0323764, -0.00157001, 0.995871, 0.0907665]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'NORM', 'DIS2D']
ImagingFrequency123.253
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressVassar Street 43,Cambridge,Boston,US,02139
InstitutionNameMIT
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps255
PhaseResolution1
PixelBandwidth360
ProcedureStepDescriptionOliva^Alex Ben
ProtocolNamet2w_1x1x1
PulseSequenceDetails%SiemensSeq%\tse
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE256
RefLinesPE24
RepetitionTime7.97
SAR0.477918
ScanningSequenceSE
SequenceName*tseR2d1_28
SequenceVariantSK\SP
SeriesDescriptiont2w_1x1x1
SeriesNumber9
ShimSetting[-5593, -1529, 3173, 482, 28, -115, -83, -16]
SliceThickness1.1
SliceTiming[0, 47.8125, 95.6406, 103.453, 151.281, 0.3125, 48.125, 95.9531, 103.781, 151.594, 0.60938, 48.4375, 96.25, 104.094, 151.922, 0.92188, 48.7344, 96.5625, 104.422, 152.234, 1.21875, 49.0469, 96.8594, 104.734, 152.562, 1.53125, 49.3594, 97.1719, 105.062, 152.875, 1.84375, 49.6562, 97.4844, 105.375, 153.188, 2.14062, 49.9688, 97.7812, 105.688, 153.516, 2.45312, 50.2656, 98.0938, 106.016, 153.828, 2.76562, 50.5781, 98.4062, 106.328, 154.156, 3.0625, 50.8906, 98.7031, 106.641, 154.469, 3.375, 51.1875, 99.0156, 106.969, 154.781, 3.67188, 51.5, 99.3125, 107.281, 155.109, 3.98438, 51.8125, 99.625, 107.609, 155.422, 4.29688, 52.1094, 99.9375, 107.922, 155.75, 4.59375, 52.4219, 60.2344, 108.25, 156.062, 4.90625, 52.7188, 60.5469, 108.562, 156.375, 5.20312, 53.0312, 60.8438, 108.875, 156.703, 5.51562, 53.3438, 61.1562, 109.203, 157.016, 5.82812, 53.6406, 61.4688, 109.516, 157.344, 6.125, 53.9531, 61.7656, 109.828, 157.656, 6.4375, 54.25, 62.0781, 110.156, 157.969, 6.75, 54.5625, 62.3906, 110.469, 158.297, 7.04688, 54.875, 62.6875, 110.797, 158.609, 7.35938, 55.1719, 63, 111.109, 158.938, 7.65625, 55.4844, 63.2969]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices1.21
StationNameMRC35115
TxRefAmp250.608
md5sumabae548e33e0f80fb1510c095dcdbe9b
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.