MRIQC: individual T2w report

Summary

  • BIDS filename: sub-04_ses-01_T2w.
  • Date and time: 2021-02-09, 04:42.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.5248316192402762
cnr2.574857531622364
efc0.4114368333916279
fber3806.7317965154502
fwhmavg2.589937383878383
fwhmx2.48955
fwhmy2.93745
fwhmz2.342812151635149
icvscsf0.16669104096486959
icvsgm0.4011260118495578
icvswm0.4321829471855726
inumed1.639035940170288
inurange0.2720854043960572
qi16.981092757430414e-06
qi20.003348700924349563
rpvecsf34.46872962018211
rpvegm15.19747808343133
rpvewm16.577144176106685
sizex256
sizey256
sizez128
snrcsf4.11845603733686
snrgm7.436585569996774
snrtotal6.369446536069947
snrwm7.5532980008762065
snrdcsf316.50034618654354
snrdgm91.95870237151567
snrdtotal154.45613863999822
snrdwm54.90936736193539
spacingx1.0
spacingy1.0
spacingz1.2099988460540771
summarybgk150.94681844982387
summarybgmad11.92965734276663
summarybgmean22.195862026336233
summarybgmedian16.356680631637573
summarybgn2645179.0
summarybgp054.089170157909393
summarybgp9552.10394233465195
summarybgstdv20.772406173039418
summarycsfk1.0749185198633153
summarycsfmad1423.8339390821711
summarycsfmean5621.267729444907
summarycsfmedian5763.289611428976
summarycsfn16978.0
summarycsfp052906.2919490695
summarycsfp957309.101458090544
summarycsfstdv1399.3399051772096
summarygmk0.0285108091341586
summarygmmad224.41445575122472
summarygmmean1678.1879777946078
summarygmmedian1674.5151796638966
summarygmn8210.0
summarygmp051320.5249527037145
summarygmp952056.529413077235
summarygmstdv225.1588690239547
summarywmk0.2439922559888288
summarywmmad129.66168554515207
summarywmmean997.1010101965962
summarywmmedian999.8680579662323
summarywmn118904.0
summarywmp05774.8317905664444
summarywmp951209.0752795934677
summarywmstdv132.3744744776693
tpmoverlapcsf0.1546541154384613
tpmoverlapgm0.40127798914909363
tpmoverlapwm0.4656200408935547
wm2max0.14274146470067606
AcquisitionMatrixPE256
AcquisitionNumber1
AcquisitionTime14:30:59.042500
BaseResolution256
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DeviceSerialNumber167012
DwellTime5.4e-06
EchoTime0.12
EchoTrainLength28
FlipAngle90
ImageOrientationPatientDICOM[0.998222, 0.00449805, -0.0594415, 0.010628, 0.967744, 0.251711]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'NORM', 'DIS2D']
ImagingFrequency123.253
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressVassar Street 43,Cambridge,Boston,US,02139
InstitutionNameMIT
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps255
PhaseResolution1
PixelBandwidth360
ProcedureStepDescriptionOliva^Alex Ben
ProtocolNamet2w_1x1x1
PulseSequenceDetails%SiemensSeq%\tse
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE256
RefLinesPE24
RepetitionTime7.97
SAR0.333428
ScanningSequenceSE
SequenceName*tseR2d1_28
SequenceVariantSK\SP
SeriesDescriptiont2w_1x1x1
SeriesNumber13
ShimSetting[-5630, -1589, 3148, 468, -29, -198, -37, 39]
SliceThickness1.1
SliceTiming[0, 47.8125, 95.6406, 103.453, 151.281, 0.29688, 48.125, 95.9375, 103.766, 151.594, 0.60938, 48.4219, 96.25, 104.094, 151.906, 0.92188, 48.7344, 96.5625, 104.406, 152.234, 1.21875, 49.0469, 96.8594, 104.734, 152.547, 1.53125, 49.3438, 97.1719, 105.047, 152.875, 1.82812, 49.6562, 97.4688, 105.375, 153.188, 2.14062, 49.9531, 97.7812, 105.688, 153.5, 2.45312, 50.2656, 98.0938, 106, 153.828, 2.75, 50.5781, 98.3906, 106.328, 154.141, 3.0625, 50.875, 98.7031, 106.641, 154.469, 3.375, 51.1875, 99.0156, 106.969, 154.781, 3.67188, 51.5, 99.3125, 107.281, 155.094, 3.98438, 51.7969, 99.625, 107.594, 155.422, 4.28125, 52.1094, 99.9219, 107.922, 155.734, 4.59375, 52.4062, 60.2344, 108.234, 156.062, 4.90625, 52.7188, 60.5469, 108.562, 156.375, 5.20312, 53.0312, 60.8438, 108.875, 156.703, 5.51562, 53.3281, 61.1562, 109.188, 157.016, 5.8125, 53.6406, 61.4531, 109.516, 157.328, 6.125, 53.9531, 61.7656, 109.828, 157.656, 6.4375, 54.25, 62.0781, 110.156, 157.969, 6.73438, 54.5625, 62.375, 110.469, 158.281, 7.04688, 54.8594, 62.6875, 110.781, 158.609, 7.34375, 55.1719, 62.9844, 111.109, 158.922, 7.65625, 55.4844, 63.2969]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices1.21
StationNameMRC35115
TxRefAmp218.397
md5sum5b9d7ca874f13ed9069f3fd08a78a941
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.