MRIQC: individual bold report

Summary

  • BIDS filename: sub-03_ses-05_task-train_run-3_bold.
  • Date and time: 2021-02-08, 21:08.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Framewise Displacement was computed using 3dvolreg (AFNI)
    • Framewise Displacement threshold was defined at 0.200000 mm

Visual reports

BOLD average
Standard deviation map
FMRI summary plot

Other

aor0.0007026890756302521
aqi0.0023574087815126056
dummy_trs0
dvarsnstd20.955338755696197
dvarsstd1.1341393741772154
dvarsvstd1.0070050021518993
efc0.5527989404744664
fber405.5201110839844
fdmean0.08501293830538331
fdnum2
fdperc0.8403361344537815
fwhmavg2.682347030303031
fwhmx2.511448
fwhmy2.782884
fwhmz2.752709090909091
gcor0.0217687
gsrx0.010354879312217236
gsry0.07027406990528107
sizet238
sizex76
sizey76
sizez54
snr2.7970292716476672
spacingtr1.75
spacingx2.5
spacingy2.5
spacingz2.75
summarybgk23.192507813836908
summarybgmad106.84079154335348
summarybgmean579.7724609375
summarybgmedian287.15966796875
summarybgn197002.0
summarybgp05205.35714721679688
summarybgp952000.2679443359357
summarybgstdv811.3237915039062
summaryfgk1.1956804018452445
summaryfgmad1925.9064352171254
summaryfgmean6298.30322265625
summaryfgmedian5905.43310546875
summaryfgn59002.0
summaryfgp053641.2168823242187
summaryfgp9510372.000537109374
summaryfgstdv2111.305419921875
tsnr78.04759167088196
AcquisitionMatrixPE76
AcquisitionNumber1
AcquisitionTime09:48:13.575000
BandwidthPerPixelPhaseEncode25.8
BaseResolution76
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.000509996
DeviceSerialNumber167012
DwellTime2.9e-06
EchoTime0.03
EchoTrainLength76
EffectiveEchoSpacing0.000509996
FlipAngle71
ImageCommentsUnaliased MB2/PE2/LB
ImageOrientationPatientDICOM[0.99515, -0.0980734, -0.00757407, 0.0973999, 0.993219, -0.0634761]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.253
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressVassar Street 43,Cambridge,Boston,US,02139
InstitutionNameMcGovern Institute for Brain Research (3T1)
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
MultibandAccelerationFactor2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps76
PhaseResolution1
PixelBandwidth2270
ProcedureStepDescriptionOliva^Alex Ben
ProtocolNamecmrr_run_fMRI_TRAIN
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE76
RepetitionTime1.75
SAR0.0991966
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_76
SequenceVariantSK\SS
SeriesDescriptioncmrr_run_fMRI_TRAIN
SeriesNumber12
ShimSetting[-5628, -1549, 3191, 418, -39, 132, -40, 2]
SliceThickness2.5
SliceTiming[0, 0.8975, 0.065, 0.9625, 0.1275, 1.025, 0.1925, 1.09, 0.2575, 1.1525, 0.32, 1.2175, 0.385, 1.2825, 0.45, 1.345, 0.5125, 1.41, 0.5775, 1.475, 0.64, 1.5375, 0.705, 1.6025, 0.77, 1.665, 0.8325, 0, 0.8975, 0.065, 0.9625, 0.1275, 1.025, 0.1925, 1.09, 0.2575, 1.1525, 0.32, 1.2175, 0.385, 1.2825, 0.45, 1.345, 0.5125, 1.41, 0.5775, 1.475, 0.64, 1.5375, 0.705, 1.6025, 0.77, 1.665, 0.8325]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.75
StationNameMRC35115
TaskNametrain
TotalReadoutTime0.0382497
TxRefAmp216.294
WipMemBlockeec2b773-5687-4a53-b125-d3c29fbb4709||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja
md5sumae06fe2cd2f8100d6b8d2d7e3bacf8a3
softwaremriqc
version0.16.1
Rate Image
Download

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.