MRIQC: individual bold report

Summary

  • BIDS filename: sub-03_ses-05_task-test_run-1_bold.
  • Date and time: 2021-02-08, 21:08.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Framewise Displacement was computed using 3dvolreg (AFNI)
    • Framewise Displacement threshold was defined at 0.200000 mm

Visual reports

BOLD average
Standard deviation map
FMRI summary plot

Other

aor0.00047701492537313434
aqi0.002259810485074627
dummy_trs0
dvarsnstd24.795614964194765
dvarsstd1.2087413403745328
dvarsvstd0.989250184382023
efc0.5498038674927138
fber424.4369201660156
fdmean0.08120068086106326
fdnum0
fdperc0.0
fwhmavg2.6698381818181818
fwhmx2.492604
fwhmy2.756056
fwhmz2.7608545454545452
gcor0.0192679
gsrx0.009661135263741016
gsry0.07051043212413788
sizet268
sizex76
sizey76
sizez54
snr2.8253280434676284
spacingtr1.75
spacingx2.5
spacingy2.5
spacingz2.75
summarybgk25.625615544782892
summarybgmad99.15176071101854
summarybgmean555.7228393554688
summarybgmedian278.9104309082031
summarybgn197165.0
summarybgp05202.62387084960938
summarybgp951896.1917724609366
summarybgstdv782.3506469726562
summaryfgk1.2457731482255072
summaryfgmad1895.1920281733526
summaryfgmean6249.92919921875
summaryfgmedian5868.55224609375
summaryfgn58703.0
summaryfgp053643.0387939453126
summaryfgp9510296.392089843746
summaryfgstdv2077.104736328125
tsnr74.16382902651094
AcquisitionMatrixPE76
AcquisitionNumber1
AcquisitionTime09:05:55.635000
BandwidthPerPixelPhaseEncode25.8
BaseResolution76
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.000509996
DeviceSerialNumber167012
DwellTime2.9e-06
EchoTime0.03
EchoTrainLength76
EffectiveEchoSpacing0.000509996
FlipAngle71
ImageCommentsUnaliased MB2/PE2/LB
ImageOrientationPatientDICOM[0.99515, -0.0980734, -0.00757407, 0.0973999, 0.993219, -0.0634761]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'MOSAIC']
ImagingFrequency123.253
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressVassar Street 43,Cambridge,Boston,US,02139
InstitutionNameMcGovern Institute for Brain Research (3T1)
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
MultibandAccelerationFactor2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps76
PhaseResolution1
PixelBandwidth2270
ProcedureStepDescriptionOliva^Alex Ben
ProtocolNamecmrr_run_fMRI_TEST
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE76
RepetitionTime1.75
SAR0.0992346
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_76
SequenceVariantSK\SS
SeriesDescriptioncmrr_run_fMRI_TEST
SeriesNumber7
ShimSetting[-5628, -1549, 3191, 418, -39, 132, -40, 2]
SliceThickness2.5
SliceTiming[0, 0.8975, 0.065, 0.9625, 0.13, 1.025, 0.1925, 1.09, 0.2575, 1.155, 0.32, 1.2175, 0.385, 1.2825, 0.45, 1.345, 0.5125, 1.41, 0.5775, 1.475, 0.6425, 1.5375, 0.705, 1.6025, 0.77, 1.6675, 0.8325, 0, 0.8975, 0.065, 0.9625, 0.13, 1.025, 0.1925, 1.09, 0.2575, 1.155, 0.32, 1.2175, 0.385, 1.2825, 0.45, 1.345, 0.5125, 1.41, 0.5775, 1.475, 0.6425, 1.5375, 0.705, 1.6025, 0.77, 1.6675, 0.8325]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.75
StationNameMRC35115
TaskNametest
TotalReadoutTime0.0382497
TxRefAmp216.294
WipMemBlock511fd75b-9004-49e7-81bd-fffdc5383514||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja
md5sum6a60f17e5e21ad3228020fd6e74b9ba7
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.