MRIQC: individual T2w report

Summary

  • BIDS filename: sub-03_ses-01_T2w.
  • Date and time: 2021-02-09, 04:43.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.5544365854502885
cnr2.4274759425878076
efc0.4013672466697756
fber3372.81589488864
fwhmavg2.4531803327623116
fwhmx2.39547
fwhmy2.72252
fwhmz2.241550998286935
icvscsf0.16837875215927475
icvsgm0.40941337969224634
icvswm0.42220786814847894
inumed1.6188416481018066
inurange0.2478945255279541
qi10.0
qi20.004404631283517222
rpvecsf33.39209617045782
rpvegm14.584401072574618
rpvewm16.443098362985953
sizex256
sizey256
sizez128
snrcsf3.909041833970511
snrgm7.423271577611452
snrtotal6.577987580530366
snrwm8.401649330009137
snrdcsf299.13681855076976
snrdgm91.68354797510459
snrdtotal149.39320038071335
snrdwm57.359234616265674
spacingx1.0
spacingy1.0
spacingz1.2100014686584473
summarybgk169.44064056098185
summarybgmad11.420218268263026
summarybgmean19.831121510589053
summarybgmedian15.778357438743114
summarybgn2683423.0
summarybgp053.975649118423462
summarybgp9546.71387714147568
summarybgstdv15.608249152005602
summarycsfk0.606945118258039
summarycsfmad1189.9130647254701
summarycsfmean5109.299193746289
summarycsfmedian5214.498655434698
summarycsfn12668.0
summarycsfp052602.9755049150435
summarycsfp957040.2471816014495
summarycsfstdv1333.905611408598
summarygmk0.07834081664232917
summarygmmad215.5105705462539
summarygmmean1608.7357236834096
summarygmmedian1598.2109456062317
summarygmn9075.0
summarygmp051271.549251010269
summarygmp951979.873260974884
summarygmstdv215.285520780456
summarywmk0.22608681219556592
summarywmmad116.22835043990274
summarywmmean997.7411720074629
summarywmmedian999.8757532835007
summarywmn121929.0
summarywmp05799.2297118380666
summarywmp951188.8433254435658
summarywmstdv119.00897237713617
tpmoverlapcsf0.1733035147190094
tpmoverlapgm0.42209768295288086
tpmoverlapwm0.4905835688114166
wm2max0.15622092573864488
AcquisitionMatrixPE256
AcquisitionNumber1
AcquisitionTime09:32:56.657500
BaseResolution256
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DeviceSerialNumber167012
DwellTime5.4e-06
EchoTime0.12
EchoTrainLength28
FlipAngle90
ImageOrientationPatientDICOM[0.994915, -0.0254419, 0.0974488, 0.0142399, 0.993382, 0.113969]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'NORM', 'DIS2D']
ImagingFrequency123.253
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressVassar Street 43,Cambridge,Boston,US,02139
InstitutionNameMIT
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps255
PhaseResolution1
PixelBandwidth360
ProcedureStepDescriptionOliva^Alex Ben
ProtocolNamet2w_1x1x1
PulseSequenceDetails%SiemensSeq%\tse
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE256
RefLinesPE24
RepetitionTime7.97
SAR0.353889
ScanningSequenceSE
SequenceName*tseR2d1_28
SequenceVariantSK\SP
SeriesDescriptiont2w_1x1x1
SeriesNumber9
ShimSetting[-5599, -1565, 3166, 384, -52, 22, -25, 9]
SliceThickness1.1
SliceTiming[0, 47.8203, 95.6406, 103.461, 151.281, 0.3125, 48.125, 95.9453, 103.781, 151.602, 0.61719, 48.4375, 96.25, 104.102, 151.922, 0.92188, 48.7422, 96.5625, 104.422, 152.242, 1.22656, 49.0469, 96.8672, 104.734, 152.555, 1.53125, 49.3516, 97.1719, 105.055, 152.875, 1.84375, 49.6641, 97.4844, 105.375, 153.195, 2.14844, 49.9688, 97.7891, 105.695, 153.516, 2.45312, 50.2734, 98.0938, 106.008, 153.828, 2.75781, 50.5781, 98.3984, 106.328, 154.148, 3.0625, 50.8828, 98.7031, 106.648, 154.469, 3.375, 51.1953, 99.0156, 106.969, 154.789, 3.67969, 51.5, 99.3203, 107.289, 155.109, 3.98438, 51.8047, 99.625, 107.609, 155.43, 4.29688, 52.1172, 99.9375, 107.922, 155.742, 4.60156, 52.4219, 60.2422, 108.242, 156.062, 4.90625, 52.7266, 60.5469, 108.562, 156.383, 5.21094, 53.0312, 60.8516, 108.883, 156.703, 5.51562, 53.3359, 61.1562, 109.203, 157.023, 5.82812, 53.6484, 61.4688, 109.516, 157.336, 6.13281, 53.9531, 61.7734, 109.836, 157.656, 6.4375, 54.2578, 62.0781, 110.156, 157.977, 6.75, 54.5625, 62.3828, 110.477, 158.297, 7.05469, 54.875, 62.6875, 110.797, 158.617, 7.35938, 55.1797, 63, 111.117, 158.938, 7.66406, 55.4844, 63.3047]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices1.21
StationNameMRC35115
TxRefAmp215.453
md5sum03ef46feae437f28978c1c88f900a5c2
softwaremriqc
version0.16.1
Rate Image
Download

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.