MRIQC: individual T2w report

Summary

  • BIDS filename: sub-02_ses-01_T2w.
  • Date and time: 2021-02-09, 04:42.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.45962157828462924
cnr2.999424051324223
efc0.41160065524269923
fber4297.847563537072
fwhmavg2.5844987457283035
fwhmx2.44893
fwhmy3.00101
fwhmz2.3035562371849103
icvscsf0.12562570845345233
icvsgm0.4335828770799362
icvswm0.44079141446661146
inumed1.6988623142242432
inurange0.288450264930725
qi10.0
qi20.006010029079065702
rpvecsf40.17804249219566
rpvegm12.810530692750971
rpvewm14.316009519908862
sizex256
sizey256
sizez128
snrcsf3.709638169422505
snrgm8.073336969887752
snrtotal6.454122130658589
snrwm7.579391252665508
snrdcsf367.1587274786554
snrdgm114.71443500150599
snrdtotal182.25996848247848
snrdwm64.90674296727408
spacingx1.0
spacingy1.0
spacingz1.2100030183792114
summarybgk9.899968534906323
summarybgmad10.090910236508144
summarybgmean17.132439463005227
summarybgmedian14.254526853561401
summarybgn2534951.0
summarybgp053.595736503601074
summarybgp9538.78258657455444
summarybgstdv11.211331170729864
summarycsfk0.32884194212982454
summarycsfmad1690.798648213407
summarycsfmean5572.025994247641
summarycsfmedian5655.258795619011
summarycsfn12584.0
summarycsfp052765.750625157357
summarycsfp957530.37117266655
summarycsfstdv1524.4166230017518
summarygmk-0.030883136156090174
summarygmmad220.66726347382905
summarygmmean1761.5714342578808
summarygmmedian1766.9192340373993
summarygmn19586.0
summarygmp051393.5084190964699
summarygmp952111.0825850963593
summarygmstdv218.85301373675708
summarywmk0.022732550458429035
summarywmmad131.9434112056631
summarywmmean999.0982830496545
summarywmmedian999.7431671619415
summarywmn147242.0
summarywmp05782.2011086940765
summarywmp951215.7441956996918
summarywmstdv131.90238357289013
tpmoverlapcsf0.14986146986484528
tpmoverlapgm0.4269355535507202
tpmoverlapwm0.4903715252876282
wm2max0.14349701393497014
AcquisitionMatrixPE256
AcquisitionNumber1
AcquisitionTime12:26:21.052500
BaseResolution256
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DeviceSerialNumber167012
DwellTime5.4e-06
EchoTime0.12
EchoTrainLength28
FlipAngle90
ImageOrientationPatientDICOM[0.999582, -0.0208508, -0.0200098, 0.0247784, 0.974703, 0.222124]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'NORM', 'DIS2D']
ImagingFrequency123.253
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressVassar Street 43,Cambridge,Boston,US,02139
InstitutionNameMIT
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps255
PhaseResolution1
PixelBandwidth360
ProcedureStepDescriptionOliva^Alex Ben
ProtocolNamet2w_1x1x1
PulseSequenceDetails%SiemensSeq%\tse
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE256
RefLinesPE24
RepetitionTime7.97
SAR0.385826
ScanningSequenceSE
SequenceName*tseR2d1_28
SequenceVariantSK\SP
SeriesDescriptiont2w_1x1x1
SeriesNumber9
ShimSetting[-5650, -1581, 3185, 495, -89, -188, 86, 46]
SliceThickness1.1
SliceTiming[0, 47.8203, 95.6406, 103.461, 151.281, 0.30469, 48.125, 95.9453, 103.773, 151.594, 0.60938, 48.4297, 96.25, 104.094, 151.914, 0.91406, 48.7344, 96.5547, 104.414, 152.234, 1.22656, 49.0391, 96.8594, 104.734, 152.555, 1.53125, 49.3516, 97.1719, 105.055, 152.875, 1.83594, 49.6562, 97.4766, 105.367, 153.188, 2.14062, 49.9609, 97.7812, 105.688, 153.508, 2.45312, 50.2734, 98.0938, 106.008, 153.828, 2.75781, 50.5781, 98.3984, 106.328, 154.148, 3.0625, 50.8828, 98.7031, 106.648, 154.469, 3.36719, 51.1875, 99.0078, 106.969, 154.789, 3.67188, 51.4922, 99.3125, 107.281, 155.102, 3.98438, 51.8047, 99.625, 107.602, 155.422, 4.28906, 52.1094, 99.9297, 107.922, 155.742, 4.59375, 52.4141, 60.2344, 108.242, 156.062, 4.90625, 52.7266, 60.5391, 108.555, 156.375, 5.21094, 53.0312, 60.8516, 108.875, 156.695, 5.51562, 53.3359, 61.1562, 109.195, 157.016, 5.82031, 53.6406, 61.4609, 109.516, 157.336, 6.125, 53.9453, 61.7656, 109.836, 157.656, 6.4375, 54.2578, 62.0781, 110.156, 157.977, 6.74219, 54.5625, 62.3828, 110.469, 158.289, 7.04688, 54.8672, 62.6875, 110.789, 158.609, 7.35156, 55.1719, 62.9922, 111.109, 158.93, 7.66406, 55.4766, 63.2969]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices1.21
StationNameMRC35115
TxRefAmp212.837
md5sumb0b0b6f042db931a7a3963d4aba824e7
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.