MRIQC: individual T1w report

Summary

  • BIDS filename: sub-02_ses-01_T1w.
  • Date and time: 2021-02-09, 04:59.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.3324683787337124
cnr3.943248954636982
efc0.5065139551129257
fber10058.4794075337
fwhmavg3.9994366666666665
fwhmx3.98688
fwhmy4.09853
fwhmz3.9129
icvscsf0.18361282911724086
icvsgm0.4381713516569135
icvswm0.37821581922584563
inumed1.4105422496795654
inurange0.35272934436798087
qi10.01868971916124746
qi20.05292431656018896
rpvecsf28.063603599186017
rpvegm13.125396739262207
rpvewm18.092903812714102
sizex176
sizey256
sizez256
snrcsf2.827532182624685
snrgm15.40723375866603
snrtotal15.231636541681077
snrwm27.460143683752513
snrdcsf45.078540983964174
snrdgm90.54697853114557
snrdtotal85.02127779355042
snrdwm119.4383138655415
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk13.381183968398705
summarybgmad5.485144144239075
summarybgmean3.6710559265516842
summarybgmedian3.699673503637314
summarybgn2079233.0
summarybgp050.0
summarybgp9511.20783443748951
summarybgstdv3.984466155722222
summarycsfk25.64394327548405
summarycsfmad113.65541322401259
summarycsfmean406.654009865182
summarycsfmedian377.4211043342948
summarycsfn17127.0
summarycsfp05259.35799399763346
summarycsfp95618.2807308137417
summarycsfstdv133.47684888793927
summarygmk-0.011732099250983286
summarygmmad49.285633413677566
summarygmmean757.1876530056109
summarygmmedian758.1066264659166
summarygmn34173.0
summarygmp05675.6583142980933
summarygmp95837.2687580510974
summarygmstdv49.20387047228154
summarywmk1.3134663254489798
summarywmmad31.13625940700416
summarywmmean998.9015613366298
summarywmmedian999.9999852478504
summarywmn207764.0
summarywmp05936.1806173101068
summarywmp951055.8215295821428
summarywmstdv36.416327248133484
tpmoverlapcsf0.1705329269170761
tpmoverlapgm0.4672514796257019
tpmoverlapwm0.5067532658576965
wm2max0.4586514947347407
AcquisitionMatrixPE256
AcquisitionNumber1
AcquisitionTime12:04:36.122500
BaseResolution256
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DeviceSerialNumber167012
DwellTime1.15e-05
EchoTime0.00252
FlipAngle9
ImageOrientationPatientDICOM[0.0248898, 0.974726, 0.222015, -0.0148748, 0.22242, -0.974837]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM']
ImagingFrequency123.253
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressVassar Street 43,Cambridge,Boston,US,02139
InstitutionNameMIT
InstitutionalDepartmentNameDepartment
InversionTime0.9
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingSteps256
PhaseResolution1
PixelBandwidth170
ProcedureStepDescriptionOliva^Alex Ben
ProtocolNamet1w_mpr_sag_1x1x1_176
PulseSequenceDetails%SiemensSeq%\tfl
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE256
RepetitionTime1.9
SAR0.0666815
ScanOptionsIR
ScanningSequenceGR\IR
SequenceName*tfl3d1_16ns
SequenceVariantSK\SP\MP
SeriesDescriptiont1w_mpr_sag_1x1x1_176
SeriesNumber5
ShimSetting[-5642, -1591, 3088, -119, 83, -161, 136, -3]
SliceThickness1
SoftwareVersionssyngo MR E11
StationNameMRC35115
TxRefAmp212.837
md5sum3db35995d53e67499c5462883e8e0341
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.